PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046721-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 264aa    MW: 29755.1 Da    PI: 4.9868
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046721-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.4e-095292248
                      T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
                      + W++Ia +++ gRt++++k++w++++
  PSME_00046721-RA  5 R-WSLIAGRLP-GRTDNEIKNYWNSHM 29
                      5.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.769133IPR017930Myb domain
SuperFamilySSF466898.07E-7432IPR009057Homeodomain-like
CDDcd001673.79E-6529No hitNo description
PfamPF002491.6E-6528IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-12530IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MHAFRWSLIA GRLPGRTDNE IKNYWNSHMR QNGVQLQAKA QSLKKRPKSP PLFENHVSRA  60
IPLKIKPNYS NGYGSTTNIP TSDVSLTFSN IRETTNSSKS GGCILGNDSI TEGGSKLMAF  120
GIVDVNLAQT EDRISVTSIS SLPDQKSRPS NDHFAGHEAI FDDSLFHLKD LFFPDCNMLP  180
WPSDISTDFA VEEFFTEPPT LDRERNQLEY ICSDQSNVQF VNSSTVAIGE GMEEFSDSTD  240
HVDWIHEIGY VTWKMNSEYM YVVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14248LKKRPKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.19e-12myb domain protein 5